Other environments

Docker

If the user wishes to run FLAIR using docker instead of cloning this repository, the following commands can be used: docker pull quay.io/brookslab/flair docker run -w /usr/data -v [your_path_to_data]:/usr/data  -t -d [image_id] docker exec [container_id] python3 /usr/local/flair/flair.py [your_command]

Conda Environment

Users can run FLAIR within the conda environment provided in misc/flair_conda_env.yaml. FLAIR should run smoothly in this environment. Refer to the conda docs for how to create an environment from an environment.yml file.